Transcript 18443 | MetamORF

Transcript

ID CARD

MetamORF ID

18443

ENSMUST00000133579

Name

Spag5-204

Strand

Biotype

retained_intron

Start-end positions

78301624-78315190

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:54141

Aliases

AI874642,
D11Bhm180e, Deepest, ENSMUSG00000002055,
MAP126, Mastrin, MGI:1927470,
NCBI:54141, OFF:Spag5, S17,
Spag5

Chr 11

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
641064	45	CTG ...	LCQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
91205	66	CTG ...	LAV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell, Testis
18442	138	CTG ...	LQI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
449274	48	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
18655	60	GTG ...	VKD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
21525	129	CTG ...	LTS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell, Testis
1287339	105	AAG ...	KEV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
640157	69	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3

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