Transcript 1844 | MetamORF

Transcript

ID CARD

MetamORF ID

1844

ENSMUST00000080537

Name

Rac1-201

Strand

Biotype

protein_coding

Start-end positions

143503634-143528036

CDS Start-stop positions

143506975-143527797

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:19353

Aliases

AL023026,
D5Ertd559e, ENSMUSG00000001847, MGI:97845,
NCBI:19353, OFF:Rac1, Rac1

Chr 5

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1019730	159	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1660822	153	TTG ...	LTK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
66399	99	TTG ...	LVK ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
169478	33	CTG ...	LHH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
516802	30	TTG ...	LTT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
63113	39	ATG ...	MTD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
901456	120	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1945	42	GTG ...	VLS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Skin_tumor, v6-5
177158	39	GTG ...	VVA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF, Neutrophil, v6-5
1685726	33	ATG ...	MIK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1662349	210	GTG ...	VLS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
903672	207	CTG ...	LSN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
185862	63	CTG ...	LDK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
174334	69	CTG ...	LFL ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, Neutrophil, NSC, Spleen_B_cell, v6-5
66119	42	CTG ...	LSQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1843	54	CTG ...	LDK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
188387	54	CTG ...	LES ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
66751	102	CTG ...	LLV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
185828	63	ATG ...	MHF ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
65881	36	GTG ...	VAA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF, Neutrophil, v6-5
190761	48	ATG ...	MTD ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, v6-5

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