Transcript 18373 | MetamORF

Transcript

ID CARD

MetamORF ID

18373

ENSMUST00000047145

Name

Trim41-201

Strand

Biotype

protein_coding

Start-end positions

48806404-48817353

CDS Start-stop positions

48807245-48816655

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:211007

Aliases

AW552703,
BC020156, ENSMUSG00000040365, MGI:2384814,
NCBI:211007, OFF:Trim41, R75223,
RINCK, Trim41

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
21829	177	CTG ...	LVG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Testis
20297	120	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Testis
1842330	42	CTG ...	LNI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
299417	39	CTG ...	LAD ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14
304069	84	CTG ...	LAG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, R1E
19765	165	ATG ...	MAL ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Testis
647583	39	ATG ...	MNK ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, R1E
19361	144	GTG ...	VGW ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Testis
90781	114	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Testis
641047	36	TTG ...	LAY ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
18372	123	CTG ...	LLN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Testis
1837150	39	CTG ...	LSE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E

Export data