Transcript 18230 | MetamORF

Transcript

ID CARD

MetamORF ID

18230

ENSMUST00000190993

Name

Srsf2-206

Strand

Biotype

protein_coding

Start-end positions

116850054-116853072

CDS Start-stop positions

116852028-116852929

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

NCBI:20382

Aliases

D11Wsu175e,
ENSMUSG00000034120, MGI:98284, MRF-1,
NCBI:20382, OFF:Srsf2, Pr264,
SC35, Sfrs10, Sfrs2,
Srsf2

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
932979	135	ATC ...	INL ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
450497	33	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
21937	48	CTG ...	LTE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, Testis
935354	192	AAG ...	KPL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
932568	105	ATC ...	IQV ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
933882	33	ACG ...	TAA ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
22923	231	CTG ...	LPE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, Brain, E14, R1E, Testis
21293	39	CTG ...	LRF ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF, Testis
1290872	72	ACG ...	TRT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
930700	39	AAG ...	KPS ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
975283	45	ACG ...	TEL ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
18229	201	CTG ...	LPE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, R1E, Testis
935685	45	ATC ...	IEK ...	Ribo-seq	ATC	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
933328	75	ATC ...	IPL ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
293609	108	GTG ...	VLC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3

Export data