Transcript 18224 | MetamORF

Transcript

ID CARD

MetamORF ID

18224

ENSMUST00000102869

Name

Xpo1-202

Strand

Biotype

protein_coding

Start-end positions

23256078-23298249

CDS Start-stop positions

23261841-23296107

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:103573

Aliases

AA420417,
Crm1, ENSMUSG00000020290, Exp1,
MGI:2144013, NCBI:103573, OFF:Xpo1,
Xpo1

Chr 11

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
305480	72	TTG ...	LDT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
297252	75	TTG ...	LHT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
301930	63	ATG ...	MYQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E
305292	108	TTG ...	LFL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E
318871	51	CTG ...	LEI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
647279	39	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
641302	48	ATG ...	MLL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E
292849	54	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
293344	54	CTG ...	LEI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
651955	99	CTG ...	LSS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
772144	102	CTG ...	LYL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E
645077	30	GTG ...	VED ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
774108	36	GTG ...	VHR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
309521	60	ATG ...	MEE ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
1597332	51	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
311234	117	CTG ...	LKT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E
651004	57	TTG ...	LLQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
293938	66	ATG ...	MVM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
645509	51	GTG ...	VAQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
304574	150	TTG ...	LQV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, R1E
643688	33	GTG ...	VIF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
651742	48	ATG ...	MLG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
650842	45	TTG ...	LLV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E
1837046	57	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1838117	162	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1838303	156	CTG ...	LAA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
641036	51	CTG ...	LML ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
301282	54	ATG ...	MMN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
640858	81	TTG ...	LHK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
298550	144	GTG ...	VKI ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, R1E
642713	36	GTG ...	VKK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
309641	81	TTG ...	LKS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
774805	54	CTG ...	LGF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
451048	69	CTG ...	LFQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
308812	63	ATG ...	MGK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
297833	42	TTG ...	LVS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E
653541	39	TTG ...	LVH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
299032	144	CTG ...	LKF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
1842429	180	GTG ...	VVG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1840357	30	GTG ...	VKV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
770632	36	TTG ...	LGN ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
658721	54	ATG ...	MWL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
304681	123	TTG ...	LST ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
648303	39	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
311010	90	ATG ...	MQF ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E
293635	75	CTG ...	LFP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
301812	159	CTG ...	LKW ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
453837	33	TTG ...	LIF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
18223	36	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
1838772	48	TTG ...	LER ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
446204	54	ATG ...	MQL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
651578	84	ATG ...	MLH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
641270	66	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
649946	66	CTG ...	LPH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
651391	48	CTG ...	LEV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1483309	39	ATG ...	MRN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
643517	57	CTG ...	LHS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1128326	63	CTG ...	LQS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
452809	36	TTG ...	LIS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
312094	78	TTG ...	LIT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
657723	33	CTG ...	LHS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
659749	93	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E

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