Transcript 18116 | MetamORF

Transcript

ID CARD

MetamORF ID

18116

ENSMUST00000183317

Name

Ptprv-210

Strand

Biotype

processed_transcript

Start-end positions

135108498-135132594

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:13924

Aliases

ENSMUSG00000097993,
Esp, MGI:108027, NCBI:13924,
OFF:Ptprv, OST, OST-PTP,
Ptprv

Chr 1

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
26166	237	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
70057	258	CTG ...	LWL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
28855	159	CTG ...	LTK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
41194	285	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
53858	270	GTG ...	VGQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
23665	111	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
53301	171	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
31074	165	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
32058	108	GTG ...	VAM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
38507	252	TTG ...	LGT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
47778	174	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
53516	123	TTG ...	LDG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
50124	150	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
41773	261	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
54379	288	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
32213	192	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
90655	132	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
40287	153	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
44438	144	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
34449	300	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Testis
44408	174	ATG ...	MEQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Testis
48899	183	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
23109	243	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
27853	102	ATG ...	MPL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Testis
43038	165	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
18115	81	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
39711	129	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
29960	150	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
47790	135	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
25577	279	ATG ...	MEV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Testis
23984	141	GTG ...	VKQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
24503	144	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
45324	132	GTG ...	VCT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
41999	213	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
33738	222	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
41413	111	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
37112	210	CTG ...	LLY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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