Transcript 192187

Transcript

ID CARD

MetamORF ID

192187

ENSMUST00000136110

Name

1810058I24Rik-202

Strand

Biotype

lincRNA

Start-end positions

35252732-35262022

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:67705

Aliases

1810058I24Rik,
AI414869, AI848234, ENSMUSG00000073155,
MGI:1914955, NCBI:67705, OFF:1810058I24Rik

Chr 6

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1094198	72	TTG ...	LGL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	Liver, v6-5
1095161	60	CTG ...	LGL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	Liver, v6-5
192186	228	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intergenic ncRNA sORF	BMDC, Brain, Liver, MEF
1091551	36	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	v6-5
1316794	66	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	E14
1246825	39	AAG ...	KDL ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intergenic ncRNA sORF	E14
195798	216	CTG ...	LVS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	BMDC, Brain
581370	39	CTG ...	LCS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	3T3, E14
198564	72	ATG ...	MTG ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intergenic ncRNA sORF	E14, MEF
1095438	42	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	v6-5
1515353	36	ATG ...	MDL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF, NSC
194110	138	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain
1668579	30	TTG ...	LDS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF
1315456	75	CTG ...	LGG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intergenic ncRNA sORF	E14
1094611	33	CTG ...	LGF ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF, v6-5
1092475	54	TTG ...	LFI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	Liver, v6-5
198681	54	CTG ...	LCS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF
2892	66	CTG ...	LAK ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Intergenic ncRNA sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
200917	213	GTG ...	VSG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain
415201	48	ATT ...	IYF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	E14
3096	75	ATG ...	MPN ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Intergenic ncRNA sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
69104	168	TTG ...	LKR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intergenic ncRNA sORF	E14, NSC
204636	132	TTG ...	LGL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain
2823	33	CTG ...	LEA ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Intergenic ncRNA sORF	BMDC, E14, MEF, NSC, v6-5

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