Transcript 18067 | MetamORF

Transcript

ID CARD

MetamORF ID

18067

ENSMUST00000021046

Name

Ddx42-201

Strand

Biotype

protein_coding

Start-end positions

106216926-106249139

CDS Start-stop positions

106224098-106248166

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:72047

Aliases

1810047H21Rik,
AW319508, AW556242, B430002H05Rik,
Ddx42, ENSMUSG00000020705, MGI:1919297,
NCBI:72047, OFF:Ddx42, RHELP,
RNAHP, SF3b125

Chr 11

ORFs

85 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
652425	45	TTG ...	LDL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil
317151	75	TTG ...	LDL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E
309959	51	TTG ...	LYG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, R1E
457592	54	TTG ...	LTL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
446571	42	TTG ...	LTL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell, v6-5
452958	102	CTG ...	LDA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
652350	78	CTG ...	LLH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
1125447	48	GTG ...	VQL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
1603262	33	CTG ...	LKW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1129717	180	TTG ...	LQL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1288424	54	ATT ...	IWK ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1128878	189	ATG ...	MDQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
1291387	60	ATC ...	IRR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
640574	120	GTG ...	VPL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
642603	174	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
1599242	51	ATG ...	MKP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
937869	63	ATC ...	IIR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
655594	123	CTG ...	LDL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
657682	123	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
455910	78	ATG ...	MNN ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Spleen_B_cell
657212	213	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1295814	141	AGA ...	RST ...	Ribo-seq	AGA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
641492	87	TTG ...	LES ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
658671	81	TTG ...	LMN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1289651	216	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1123767	30	ATG ...	MTL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, v6-5
457590	48	GTG ...	VPL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Spleen_B_cell, v6-5
1483353	57	GTG ...	VTL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, R1E
1123022	63	CTG ...	LAD ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
646980	54	CTG ...	LFQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1130073	117	TTG ...	LGK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
771471	123	CTG ...	LRL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14
1529175	45	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
657927	48	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1284263	93	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
456128	99	CTG ...	LRL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell
658805	78	GTG ...	VEE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
657726	108	CTG ...	LLH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
656644	129	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
649814	207	CTG ...	LEP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
1284458	42	AGG ...	RQK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
300784	45	TTG ...	LWR ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, NSC, R1E, Spleen_B_cell
1342900	105	TTG ...	LHL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
644187	51	TTG ...	LAH ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E, v6-5
1293853	207	AGG ...	RNW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1599951	54	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
659071	96	TTG ...	LLI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
655808	204	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1290694	48	AGG ...	RER ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1344072	117	ATG ...	MEI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1288631	63	ATC ...	ISL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
648106	75	CTG ...	LVS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
1295885	246	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
456645	69	GTG ...	VKG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, Neutrophil, Spleen_B_cell
641943	183	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
456366	87	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
1129198	228	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
639943	93	CTG ...	LDL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1285513	117	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
656816	117	TTG ...	LES ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
659255	195	GTG ...	VLG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
652756	57	TTG ...	LIR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
1293331	213	ATC ...	IRR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1125639	51	ATG ...	MPG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
660098	219	TTG ...	LVL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1126489	69	ATG ...	MEL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
654962	144	TTG ...	LGQ ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
656579	81	TTG ...	LVE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
18066	57	GTG ...	VEE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, Testis
657186	126	GTG ...	VLH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
653016	189	TTG ...	LVL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
647209	114	TTG ...	LGQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
654307	192	CTG ...	LGR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
455411	93	CTG ...	LQP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
648631	54	ATG ...	MKP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1128850	171	TTG ...	LCV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
656043	237	CTG ...	LEP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
309921	33	TTG ...	LKM ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
653783	165	GTG ...	VLG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
648118	162	CTG ...	LGR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
652825	60	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
18402	60	TTG ...	LVE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Testis
294478	60	CTG ...	LVT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, R1E
449737	48	GTG ...	VVW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
654493	150	GTG ...	VPL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5

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