Transcript 18005 | MetamORF

Transcript

ID CARD

MetamORF ID

18005

ENSMUST00000146068

Name

Spag5-206

Strand

Biotype

retained_intron

Start-end positions

78301655-78314863

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:54141

Aliases

AI874642,
D11Bhm180e, Deepest, ENSMUSG00000002055,
MAP126, Mastrin, MGI:1927470,
NCBI:54141, OFF:Spag5, S17,
Spag5

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19585	135	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
91229	165	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
449274	48	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1126853	45	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
21086	162	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
91904	168	TTG ...	LLE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1702215	30	TTG ...	LSW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
20235	87	GTG ...	VGT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
20503	141	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1284743	132	AAG ...	KSQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
91567	186	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
18821	183	TTG ...	LNS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Testis
21705	210	TTG ...	LAW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
91871	162	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
18004	165	GTG ...	VLK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
21658	57	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
20903	222	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
19392	300	GTG ...	VEM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	R1E, Testis, v6-5
1601766	60	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
91346	198	TTG ...	LEE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1839083	51	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1696379	150	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
21711	186	CTG ...	LLN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1595914	36	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
18148	213	TTG ...	LSR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Testis
91694	123	TTG ...	LTV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1127827	63	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF
18718	138	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
22141	189	GTG ...	VNT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis

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