Transcript 17863 | MetamORF

Transcript

ID CARD

MetamORF ID

17863

ENSMUST00000129016

Name

Rhbdd3-204

Strand

Biotype

processed_transcript

Start-end positions

5100237-5106093

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:279766

Aliases

ENSMUSG00000034175,
MGI:2444684, NCBI:279766, OFF:Rhbdd3,
Ptag, Rhbdd3

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
293079	66	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
22009	177	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
21077	96	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
312561	198	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
315800	213	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
91740	72	GTG ...	VDT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
91675	54	GTG ...	VTE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
320266	207	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
21796	84	GTG ...	VEG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
18438	90	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
17862	126	TTG ...	LAA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
315054	219	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
307408	138	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
313363	201	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
312644	285	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
20012	87	CTG ...	LVE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
317058	216	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
21504	132	GTG ...	VAL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
299840	78	CTG ...	LDR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
317205	243	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
314859	231	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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