Transcript 17705 | MetamORF

Transcript

ID CARD

MetamORF ID

17705

ENSMUST00000133715

Name

Clint1-203

Strand

Biotype

processed_transcript

Start-end positions

45882397-45910625

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:216705

Aliases

AI642036,
AW537616, C530049I24Rik, Clint1,
ENSMUSG00000006169, Enth, Epn4,
F630206G17Rik, MGI:2144243, NCBI:216705,
OFF:Clint1

Chr 11

ORFs

76 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
650922	69	GTG ...	VVS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
641755	63	TTG ...	LGD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
643682	33	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1080259	297	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, Neutrophil
453660	60	ATG ...	MMI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
1486193	54	ATG ...	MCI ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
652763	57	ATG ...	MIP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
644972	66	GTG ...	VSS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
645875	45	ATG ...	MPL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, NSC, v6-5
644194	51	CTG ...	LEC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF
91073	183	CTG ...	LGN ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, Testis, v6-5
651944	57	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
650410	54	GTG ...	VPE ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, v6-5
447743	54	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
20040	123	CTG ...	LGE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
450663	126	GTG ...	VTL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
648301	39	TTG ...	LQT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, NSC, v6-5
20622	33	CTG ...	LEN ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil, Testis, v6-5
451270	45	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
18612	69	ATG ...	MRK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Testis, v6-5
1338347	39	CTG ...	LQH ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC
644399	36	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
648290	69	CTG ...	LEL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil, NSC, v6-5
17704	114	CTG ...	LSD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, R1E, Testis
447319	117	GTG ...	VTG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
1037303	81	CTG ...	LWL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
445589	81	CTG ...	LSP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
91215	117	TTG ...	LLL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, Testis, v6-5
8046	51	TTG ...	LVP ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
18538	180	CTG ...	LVE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Testis
652572	48	CTG ...	LVC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
306413	30	TTG ...	LVC ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC
21606	114	CTG ...	LLL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, Testis, v6-5
91717	150	GTG ...	VGM ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, Testis, v6-5
644505	108	TTG ...	LLT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
648130	48	CTG ...	LSG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
770528	186	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
652485	135	GTG ...	VGM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
21844	189	GTG ...	VTT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
18675	246	CTG ...	LGG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, Testis, v6-5
647643	123	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
651949	129	ATG ...	MVT ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
653653	105	TTG ...	LTQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
1038063	186	CTG ...	LFD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
647202	96	GTG ...	VLY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
312366	96	ATG ...	MSG ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
448248	51	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
449934	120	TTG ...	LVT ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
452393	108	GTG ...	VPS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
299543	63	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, v6-5
653938	117	GTG ...	VQC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
648665	72	CTG ...	LVV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil
91463	42	TTG ...	LRS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, Testis, v6-5
293865	30	GTG ...	VNS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, v6-5
1037940	117	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
1080351	51	GTG ...	VPH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
20984	72	GTG ...	VMR ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Testis, v6-5
21191	51	GTG ...	VQP ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
91427	105	TTG ...	LSG ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
933379	180	TTG ...	LHR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1079202	135	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
651534	60	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
644378	81	GTG ...	VDQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1037811	120	GTG ...	VPS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
296738	87	TTG ...	LSL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
649376	72	CTG ...	LIY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
644151	78	ATG ...	MDR ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Neutrophil, v6-5
448428	33	TTG ...	LIL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, Neutrophil
21721	165	CTG ...	LPS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, Testis
1125339	30	TTG ...	LPT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	NSC, v6-5
1037458	111	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
1037275	252	GTG ...	VEL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, Neutrophil
21970	102	GTG ...	VVM ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
652716	63	CTG ...	LCN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC, v6-5
311494	36	ATG ...	MIC ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, v6-5
645732	99	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF

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