Transcript 17630 | MetamORF

Metam
ORF

Transcript

Transcript

ID CARD

MetamORF ID

17630

ID

ENSMUST00000137175

Name

Gm11657-201

Strand

+

Biotype

antisense_RNA

Start-end positions

107994022-107994631

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

ID

Aliases

Gm11657

Chr 11

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
21318	201	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Overlapping sORF	Testis
19191	102	TTG ...	LTA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Overlapping sORF	Testis
91527	210	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	Testis
19027	249	TTG ...	LNS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Overlapping sORF	Testis
19788	75	TTG ...	LLP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	Testis
21896	39	GTG ...	VII ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	Testis
18286	72	TTG ...	LPK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Overlapping sORF	Testis
17629	237	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Overlapping sORF	Testis
91383	117	CTG ...	LCR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	Testis
19086	234	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	Testis

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