Transcript 17623 | MetamORF

Transcript

ID CARD

MetamORF ID

17623

ENSMUST00000154080

Name

Sdf2-203

Strand

Biotype

processed_transcript

Start-end positions

78250421-78255496

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:20316

Aliases

AI853825,
ENSMUSG00000002064, MGI:108019, NCBI:20316,
OFF:Sdf2, Sdf2

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
23908	72	CTG ...	LTH ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
21495	231	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
22842	243	ATG ...	MKI ...	Predicted Ribo-seq	ATG		12	sORFs_org_Mouse Mackowiak2015	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
91505	240	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
307072	60	ATG ...	MVW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
23362	270	GTG ...	VLV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, Neutrophil, R1E, Testis, v6-5
23549	165	GTG ...	VDD ...	Ribo-seq	GTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
22614	174	GTG ...	VTS ...	Ribo-seq	GTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
446213	90	GTG ...	VPL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
19462	165	CTG ...	LLS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Testis
18468	234	GTG ...	VLC ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Testis
17622	285	GTG ...	VSA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Testis
451230	72	GTG ...	VKA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
773115	93	ATG ...	MTA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
319667	45	CTG ...	LHS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E
446406	36	CTG ...	LED ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
20528	33	CTG ...	LRA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
18635	174	GTG ...	VCE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
300498	78	GTG ...	VDK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
450947	84	TTG ...	LAK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
22720	117	GTG ...	VCE ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
21788	162	CTG ...	LSV ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Testis
19611	249	CTG ...	LDD ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Testis
450240	54	ATG ...	MTG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
299266	48	CTG ...	LTY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
646623	99	CTG ...	LWM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
18136	36	TTG ...	LLR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Testis
447732	33	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
91483	222	GTG ...	VDD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
19468	195	GTG ...	VRF ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Testis
23533	183	GTG ...	VTG ...	Ribo-seq	GTG		15	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5

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