Transcript 17494 | MetamORF

Transcript

ID CARD

MetamORF ID

17494

ENSMUST00000131787

Name

2410006H16Rik-201

Strand

Biotype

processed_transcript

Start-end positions

62602877-62604807

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:69221

Aliases

2410006H16Rik,
ENSMUSG00000086841, MGI:1916471, NCBI:69221,
OFF:2410006H16Rik

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
302587	48	TTG ...	LPL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Neutrophil, R1E
17493	90	CTG ...	LLV ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
91569	87	CTG ...	LVT ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
17800	114	TTG ...	LSW ...	Ribo-seq	TTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1695134	108	CTG ...	LLY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
452533	102	CTG ...	LNT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, Spleen_B_cell
1696009	84	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
775663	75	GTG ...	VRC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Neutrophil, NSC, v6-5
1038653	108	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1696828	96	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1078590	39	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
456747	111	ATG ...	MLS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Spleen_B_cell, v6-5
22598	81	GTG ...	VTV ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
445662	105	GTG ...	VLN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, Spleen_B_cell
454821	108	CTG ...	LSP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Spleen_B_cell, v6-5
447075	84	GTG ...	VSP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
297960	39	ATG ...	MTL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
1038350	192	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
447898	48	CTG ...	LVP ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	E14, NSC, R1E, Spleen_B_cell
23753	84	CTG ...	LVT ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
319281	111	TTG ...	LSW ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1039184	111	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
292662	138	ATG ...	MGS ...	Ribo-seq	ATG		16	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
317807	135	ATG ...	MGS ...	Ribo-seq	ATG		15	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
18397	84	GTG ...	VTV ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
302243	99	TTG ...	LQA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil, Spleen_B_cell
1841108	39	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1286607	72	ATC ...	IVL ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
295740	69	GTG ...	VLF ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1338010	39	TTG ...	LTT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
23095	87	CTG ...	LLV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1039074	156	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1079523	63	CTG ...	LKA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil

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