Transcript 17485 | MetamORF

Transcript

ID CARD

MetamORF ID

17485

ENSMUST00000137861

Name

Shcbp1l-203

Strand

Biotype

retained_intron

Start-end positions

153445363-153448993

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:71836

Aliases

1700012A16Rik,
ENSMUSG00000042708, MGI:1919086, NCBI:71836,
OFF:Shcbp1l, Shcbp1l

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91906	42	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
29682	54	TTG ...	LSV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
24568	144	GTG ...	VVE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
73505	33	CTG ...	LTH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
22147	36	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
37262	153	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
21198	177	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
21395	45	TTG ...	LNF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
32278	108	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
41858	60	CTG ...	LTI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
37919	147	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
26974	48	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
25345	198	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
22159	195	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33170	177	TTG ...	LIQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
60119	147	TTG ...	LDS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
27175	126	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
38607	33	GTG ...	VLV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
40378	219	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
17484	84	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
39298	36	ATG ...	MHQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
45829	30	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
28026	57	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
36059	42	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
57021	159	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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