Transcript 174571

Transcript

ID CARD

MetamORF ID

174571

ENSMUST00000202289

Name

Eif4h-204

Strand

Biotype

retained_intron

Start-end positions

134623879-134639325

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:22384

Aliases

AU018978,
D5Ertd355e, E430026L18Rik, Ef4h,
eIF-4H, Eif4h, ENSMUSG00000040731,
MGI:1341822, NCBI:22384, OFF:Eif4h,
Wbscr1, Wscr1

Chr 5

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1685783	51	ATG ...	MRW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1651	150	GTG ...	VWT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1686136	39	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
901489	75	ATA ...	IRS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
829374	123	ATG ...	MGS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
902751	219	ACG ...	TTI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
66105	42	ATG ...	MLS ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil
2048	165	GTG ...	VTG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil
180155	102	TTG ...	LGD ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC
902133	225	ATA ...	IPT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
65659	69	GTG ...	VLV ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil
832001	66	GTG ...	VRL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Neutrophil, NSC
179523	81	GTG ...	VDI ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC
65771	63	GTG ...	VAM ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil
903070	213	ATC ...	IGP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
1664200	39	CTG ...	LFF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF
61379	57	ATG ...	MGP ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil
904726	30	AGG ...	RIS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
65569	66	CTG ...	LVA ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil
1311658	39	GTG ...	VCI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
1902	141	TTG ...	LQK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil

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