Transcript 173713

Transcript

ID CARD

MetamORF ID

173713

ENSMUST00000192230

Name

Capn2-202

Strand

Biotype

retained_intron

Start-end positions

182483900-182492561

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:12334

Aliases

AI326419,
CALP80, Capa-2, Capa2,
Capn2, ENSMUSG00000026509, m-calpain,
m-calpin, MGI:88264, NCBI:12334,
OFF:Capn2

Chr 1

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
350230	162	CTG ...	LTP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF
705693	57	CTG ...	LKG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
327573	60	GTG ...	VPP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF
179739	87	ATG ...	MGA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
1718592	33	GTG ...	VFA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
15133	75	GTG ...	VET ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	MEF, NSC
299254	36	CTG ...	LGT ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, NSC
195472	72	CTG ...	LQK ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, NSC
639345	93	CTG ...	LYL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
300106	72	CTG ...	LLF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
1599328	153	TTG ...	LPC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF
338318	195	CTG ...	LRH ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
1452567	51	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
383416	108	GTG ...	VVD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF
1632176	39	GTG ...	VGG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
331236	177	CTG ...	LEI ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
1489766	51	CTG ...	LTL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	MEF, NSC
389589	93	CTG ...	LPT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF
399724	105	GTG ...	VDD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF
356334	78	ATG ...	MKH ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC
591369	132	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	MEF
646814	48	CTG ...	LEA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
928568	288	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
379354	63	TTG ...	LIR ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, NSC
1347534	45	CTG ...	LFY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
935707	69	AAG ...	KPA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1485294	30	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	NSC
1596162	54	CTG ...	LAI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	MEF
15270	39	CTG ...	LQI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, NSC
173712	30	TTG ...	LKV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF
331128	63	GTG ...	VHS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
279252	42	TTG ...	LKT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF
688885	69	TTG ...	LCI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
945051	201	ATA ...	IRS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
1321813	33	CTG ...	LQP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF
1491417	30	CTG ...	LRP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
672247	48	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
363754	117	GTG ...	VEV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
10834	45	ATG ...	MRT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
304450	111	GTG ...	VVV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
939567	105	ACG ...	TTG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC

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