Transcript 17354 | MetamORF

Transcript

ID CARD

MetamORF ID

17354

ENSMUST00000186028

Name

Tpp2-203

Strand

Biotype

retained_intron

Start-end positions

43934015-43957001

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:22019

Aliases

ENSMUSG00000041763,
MGI:102724, NCBI:22019, OFF:Tpp2,
TPP-2, Tpp2, TppII

Chr 1

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
26015	102	CTG ...	LNY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, Testis
992003	57	CTG ...	LME ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1602593	90	TTG ...	LWG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
302907	30	ATG ...	MTM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
33107	174	TTG ...	LSK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, Testis
1247437	69	AAG ...	KIG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1308056	81	ATT ...	IFQ ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1307040	45	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
13876	93	GTG ...	VEL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, Testis
1044776	30	GTG ...	VLI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1194649	66	AAG ...	KYS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
935632	42	ACG ...	TEW ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
13228	30	GTG ...	VWH ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, Testis
722231	204	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
675032	189	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1630629	90	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1223572	57	ATG ...	MEL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
538669	66	CTG ...	LNG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
295068	42	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
36921	156	TTG ...	LRN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, Testis
486166	60	ATG ...	MCR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
62200	90	GTG ...	VNI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, Testis
8317	33	TTG ...	LVW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, Testis
1354975	39	CTG ...	LDK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
7716	105	TTG ...	LQS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, Testis
704512	42	CTG ...	LGS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
1307901	105	ATG ...	MVK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
991689	54	ATG ...	MEN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
398917	60	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
306888	48	ATG ...	MVM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC

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