Transcript 173249

Transcript

ID CARD

MetamORF ID

173249

ENSMUST00000201642

Name

Uso1-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

92137966-92202796

CDS Start-stop positions

92138098-92187803

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:56041

Aliases

115kDa,
ENSMUSG00000029407, MGI:1929095, NCBI:56041,
OFF:Uso1, TAP, Uso1,
Vdp

Chr 5

ORFs

81 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
178529	141	CTG ...	LQA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell
62629	150	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E, Spleen_B_cell
176184	135	GTG ...	VNG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Liver, R1E
520053	30	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
66023	30	GTG ...	VNA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, R1E
520928	30	TTG ...	LIS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, R1E, Spleen_B_cell
61355	105	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
62219	207	TTG ...	LFS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E
62498	81	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
521093	96	GTG ...	VAE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
570199	78	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, R1E
169534	96	TTG ...	LLC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver, R1E
518007	87	TTG ...	LAW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
64640	168	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E
63624	120	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E
1237786	150	AAG ...	KSQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
66035	150	CTG ...	LQG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E
1235037	144	ATA ...	IEK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
64424	198	GTG ...	VED ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
521126	36	TTG ...	LHY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, R1E, Spleen_B_cell
172671	54	TTG ...	LGI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Liver, R1E
175343	36	GTG ...	VPD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E, Spleen_B_cell
521281	105	GTG ...	VFS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Spleen_B_cell
565267	63	ATG ...	MSY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Liver
179824	75	CTG ...	LET ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
178601	105	TTG ...	LLM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, Liver, R1E
62997	72	CTG ...	LYK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
64159	108	CTG ...	LRC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
65229	147	CTG ...	LLM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E, Spleen_B_cell
177117	93	TTG ...	LKK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
66117	96	GTG ...	VLY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
1434290	168	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
905341	48	AAG ...	KLR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1236319	147	AAG ...	KRC ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
169020	81	ATG ...	MNL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
985902	48	GTG ...	VMF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
1235775	126	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1235942	165	AGG ...	RIG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
176529	81	TTG ...	LVQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Liver, R1E
168102	102	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Liver, R1E
564829	57	GTG ...	VNR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
1234407	174	ATA ...	IEK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
568317	69	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
569353	165	CTG ...	LTR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
1236812	66	AAG ...	KTS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
568228	57	GTG ...	VWA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, R1E
63657	90	GTG ...	VRL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E, Spleen_B_cell
1238372	132	CTG ...	LAK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1237448	219	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
520261	33	CTG ...	LYQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E, Spleen_B_cell
1381972	60	TTG ...	LFD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
64105	33	GTG ...	VGY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
517770	84	CTG ...	LVK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Liver, Spleen_B_cell
173248	54	GTG ...	VGI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, R1E
903492	39	ATT ...	ILR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
985149	45	ATG ...	MFN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
179963	78	CTG ...	LDD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, R1E
1686062	42	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1558831	33	CTG ...	LFH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1238655	99	AGG ...	REE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
65675	186	TTG ...	LIL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Liver, R1E
567301	156	ATG ...	MRL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14
568093	99	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
62153	111	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
1240685	96	ATA ...	IAP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
520265	81	GTG ...	VKP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Liver
62792	192	GTG ...	VRV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
180101	93	TTG ...	LQK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative CDS NMD sORF	3T3
65140	222	CTG ...	LLC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E
518060	156	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Spleen_B_cell
1240475	90	AAG ...	KTT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
167205	102	CTG ...	LRE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Liver, R1E
66058	48	GTG ...	VQQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
1235238	162	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
61831	39	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, R1E
1801546	87	TTG ...	LDT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
520194	96	TTG ...	LAE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Spleen_B_cell
568373	39	ATG ...	MCR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
568468	138	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
65034	183	CTG ...	LVS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E
174509	30	CTG ...	LVK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E

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