Transcript 17292 | MetamORF

Transcript

ID CARD

MetamORF ID

17292

ENSMUST00000027425

Name

Itm2c-201

Strand

Biotype

protein_coding

Start-end positions

85894281-85908675

CDS Start-stop positions

85894664-85907638

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:64294

Aliases

3110038L02Rik,
BRI3, Bricd2c, E25,
E25C, ENSMUSG00000026223, Itm2c,
ITM3, MGI:1927594, NCBI:64294,
OFF:Itm2c

Chr 1

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34388	48	TTG ...	LVV ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
44736	69	GTG ...	VGT ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
20420	153	ATG ...	MSA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
338134	54	GTG ...	VQR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, v6-5
32975	129	CTG ...	LRR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, MEF, NSC, Testis
52839	87	CTG ...	LCP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
32116	66	ATG ...	MSL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
30707	45	TTG ...	LPR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, NSC, Testis, v6-5
68921	51	TTG ...	LCL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, NSC, Testis, v6-5
29636	93	GTG ...	VPA ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
50903	72	GTG ...	VVG ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
54885	93	ATG ...	MSL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
995903	186	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
43143	105	ATG ...	MNV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
43280	117	TTG ...	LRR ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
361744	45	CTG ...	LVR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1699959	51	GTG ...	VGI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
412912	60	ATC ...	IEV ...	Ribo-seq	ATC	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
19915	48	CTG ...	LAG ...	Ribo-seq	CTG	strong	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
35750	90	TTG ...	LRR ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
52131	135	TTG ...	LPR ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Testis, v6-5
24692	105	TTG ...	LRS ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
24778	66	GTG ...	VCS ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Testis, v6-5
29387	72	CTG ...	LIK ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Testis
413174	66	ATT ...	IAI ...	Ribo-seq	ATT	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
40108	69	GTG ...	VVC ...	Ribo-seq	GTG	strong	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Testis, v6-5
33151	33	CTG ...	LQT ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
52841	60	CTG ...	LQT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, NSC, Testis, v6-5
35213	69	TTG ...	LYC ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
55081	45	GTG ...	VVG ...	Ribo-seq	GTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
41560	60	CTG ...	LCP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis
1282433	96	AGG ...	RLH ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
44099	75	TTG ...	LVV ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
41948	93	TTG ...	LHW ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
36483	84	CTG ...	LWC ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Testis, v6-5
48754	141	TTG ...	LCL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC, Testis, v6-5
28171	78	ATG ...	MNV ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
42216	159	TTG ...	LYC ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
17291	42	GTG ...	VGT ...	Ribo-seq	GTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
30246	78	CTG ...	LQG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, Testis

Export data