Transcript 17266 | MetamORF

Transcript

ID CARD

MetamORF ID

17266

ENSMUST00000047697

Name

Trim17-201

Strand

Biotype

protein_coding

Start-end positions

58954685-58973098

CDS Start-stop positions

58965119-58970624

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:56631

Aliases

ENSMUSG00000036964,
MGI:1861440, NCBI:56631, OFF:Trim17,
Rnf16, terf, Trim17

Chr 11

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
20977	102	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
19728	240	CTG ...	LAA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
934065	207	ATC ...	ILE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
19825	165	CTG ...	LVV ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, C2C12, E14, MEF, Spleen_B_cell, Testis
1695966	78	GTG ...	VRP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
91044	138	TTG ...	LAI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
22137	45	CTG ...	LPK ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, Spleen_B_cell, Testis
90800	105	CTG ...	LVM ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF, Spleen_B_cell, Testis
1290267	60	ATC ...	IQA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
19796	33	CTG ...	LVP ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, E14, MEF, Spleen_B_cell, Testis
19573	99	ATG ...	MRP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	sORF Upstream	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Testis
1696372	45	GTG ...	VSD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
17265	135	GTG ...	VQK ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, E14, MEF, Spleen_B_cell, Testis
19428	117	GTG ...	VED ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
21378	123	CTG ...	LRS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	Brain, MEF, Spleen_B_cell, Testis
975298	150	AGG ...	RAA ...	Ribo-seq	AGG	strong	2	sORFs_org_Mouse	sORF Upstream	MEF
90629	231	GTG ...	VLE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
19369	159	GTG ...	VAS ...	Ribo-seq	GTG	strong	9	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, C2C12, E14, MEF, Spleen_B_cell, Testis
21121	105	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
20522	126	CTG ...	LLR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, C2C12, E14, MEF, Spleen_B_cell, Testis
90636	186	TTG ...	LVI ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
19228	81	GTG ...	VCT ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, E14, MEF, Spleen_B_cell, Testis
1288777	54	ATT ...	IIR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
20497	69	CTG ...	LPN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell, Testis
1286050	75	AGG ...	RPC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF Upstream	E14
21431	144	CTG ...	LQL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
17916	30	GTG ...	VPR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
975248	141	AAG ...	KLV ...	Ribo-seq	AAG	moderate	3	sORFs_org_Mouse	sORF Upstream	E14, MEF
21930	198	TTG ...	LAG ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Spleen_B_cell, Testis
1284008	39	AAG ...	KKT ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
1285159	60	AGG ...	RVI ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
1286088	168	AAG ...	KTR ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
1696451	141	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
932972	129	AAG ...	KRS ...	Ribo-seq	AAG	weak	3	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF
18915	204	CTG ...	LEL ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, C2C12, E14, Spleen_B_cell, Testis
22007	93	GTG ...	VTI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell, Testis
18791	246	GTG ...	VYL ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
20356	108	GTG ...	VPA ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
21743	219	CTG ...	LTA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, MEF, Spleen_B_cell, Testis
419495	159	ATC ...	IIP ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, MEF
19033	51	GTG ...	VLL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Spleen_B_cell, Testis

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