Transcript 51786 | MetamORF

Transcript

ID CARD

MetamORF ID

51786

ENSMUST00000036023

Name

1700018B24Rik-201

Strand

Biotype

lincRNA

Start-end positions

48605732-48609102

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:66332

Aliases

1700018B24Rik,
MGI:1913582, NCBI:66332, OFF:1700018B24Rik

Chr 3

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52435	108	GTG ...	VFL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
53864	129	ATG ...	MVD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
54737	111	ATG ...	MVF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
53369	42	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
54622	201	CTG ...	LKR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
54336	192	TTG ...	LNP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
54810	216	ATG ...	MYE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
53755	300	CTG ...	LVQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
53610	105	CTG ...	LDC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
53878	297	GTG ...	VQP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
52525	234	ATG ...	MEG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
52249	66	ATG ...	MPI ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis
51785	150	CTG ...	LFE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Testis

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