Transcript 169575

Transcript

ID CARD

MetamORF ID

169575

ENSMUST00000105466

Name

P4ha1-203

Strand

Biotype

protein_coding

Start-end positions

59323368-59372251

CDS Start-stop positions

59337081-59371074

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:18451

Aliases

AL022634,
ENSMUSG00000019916, MGI:97463, NCBI:18451,
OFF:P4ha1, P4ha, P4ha1

Chr 10

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
289425	96	ATG ...	MSP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF
90254	135	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
929645	45	ATC ...	ISQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
232568	66	ATG ...	MPI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, MEF
192734	33	CTG ...	LTR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
627342	66	ATG ...	MCL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
915160	114	ATC ...	ILS ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1594928	159	TTG ...	LGC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
185513	108	ATG ...	MGR ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
928696	33	ATC ...	IRK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
236915	57	GTG ...	VDG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
264295	42	TTG ...	LED ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, MEF
169574	33	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
900648	60	ATA ...	ISQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
236582	69	CTG ...	LWI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
929531	60	ATT ...	ITC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
902601	60	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
904333	30	AAG ...	KTL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
928811	177	AAG ...	KIR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
928864	54	AGG ...	RTG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
227917	45	ATG ...	MTS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, MEF
638399	123	CTG ...	LFF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
223560	129	ATG ...	MMG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
58862	75	CTG ...	LSS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14
222929	42	TTG ...	LGQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
172149	57	ATG ...	MPL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF
923271	63	ATT ...	ITC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1756081	129	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
581822	66	ATG ...	MRC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
507207	42	TTG ...	LAV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
287725	57	ATG ...	MPL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14
554413	54	TTG ...	LPV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
911300	60	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
221676	30	ATG ...	MSP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF
90168	66	ATG ...	MSR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
288215	108	TTG ...	LED ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, MEF
636562	84	CTG ...	LGC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
565275	30	ATG ...	MFL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
73858	39	CTG ...	LAT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
928789	138	AAG ...	KTP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
72811	51	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
57780	78	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
928650	30	ATA ...	IGL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
929074	117	ATT ...	ITE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
81592	66	ATG ...	MSR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF
163431	72	TTG ...	LSW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
560654	45	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
901101	51	ATT ...	ITE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
243267	36	CTG ...	LIR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
257362	33	GTG ...	VGQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
912396	168	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
554095	30	CTG ...	LNI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
928880	138	ATG ...	MNV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
904866	36	ATT ...	ITT ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
211900	126	ATG ...	MGT ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF
636633	30	ATG ...	MFL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
929466	30	ATA ...	IGL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
928760	33	AAG ...	KWE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
910166	63	ATA ...	IIC ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
90390	138	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
908082	45	ATC ...	ISQ ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
261078	75	CTG ...	LGC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
928892	84	ACG ...	TWT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
90088	144	ATG ...	MCL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF

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