Transcript 167691

Transcript

ID CARD

MetamORF ID

167691

ENSMUST00000084599

Name

Rhbdd2-202

Strand

Biotype

retained_intron

Start-end positions

135636532-135644527

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:215160

Aliases

0610011L13Rik,
AI480532, ENSMUSG00000039917, MGI:1915612,
NCBI:215160, OFF:Rhbdd2, Rhbdd2,
Rhbdl7, Usmg1

Chr 5

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
179093	39	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
62077	180	GTG ...	VQN ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
174464	189	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
62740	300	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
171040	141	GTG ...	VYP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
65798	189	CTG ...	LCY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
179828	156	TTG ...	LPP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
182781	216	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
63200	108	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
171107	30	GTG ...	VLC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
181155	45	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
175427	72	GTG ...	VYS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
167690	69	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
183425	45	CTG ...	LHL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
62208	60	TTG ...	LFK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
173995	57	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain

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