Transcript 167682

Transcript

ID CARD

MetamORF ID

167682

ENSMUST00000182988

Name

Sec31a-211

Strand

Biotype

protein_coding

Start-end positions

100362008-100395901

CDS Start-stop positions

100362051-

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:69162

Aliases

1810024J13Rik,
ABP125, ABP130, AU042160,
ENSMUSG00000035325, HSPC275, MGI:1916412,
NCBI:69162, OFF:Sec31a, Sec31a,
Sec31l1

Chr 5

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
518478	129	CTG ...	LCR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, R1E
170120	72	TTG ...	LRR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	3T3, Brain, MEF, R1E
559745	66	CTG ...	LDQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, R1E
189703	135	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, MEF
520427	171	TTG ...	LCS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, R1E
565370	90	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
569547	57	TTG ...	LLA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, R1E
519458	96	ATG ...	MRG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, R1E
1659766	39	TTG ...	LNP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	MEF
1685872	93	ATG ...	MLC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
1686331	36	TTG ...	LLG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	MEF
169421	42	ATG ...	MLR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, Brain, MEF
179867	57	GTG ...	VEN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, Brain, R1E
167681	51	GTG ...	VEK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, Brain, MEF
565021	75	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
574360	168	TTG ...	LIH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
183038	45	TTG ...	LSF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	3T3, Brain, R1E
565379	108	GTG ...	VYS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
570595	81	CTG ...	LCR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
1661721	42	TTG ...	LLN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
562592	111	ATG ...	MVY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
572296	192	TTG ...	LRT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, BMDC
1660274	90	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
521507	159	GTG ...	VTD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, R1E
904580	63	ATT ...	ILV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
566055	48	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
565095	96	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Liver
564872	54	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, R1E

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