Transcript 167492

Transcript

ID CARD

MetamORF ID

167492

ENSMUST00000138544

Name

Tmem165-204

Strand

Biotype

retained_intron

Start-end positions

76199445-76205155

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:21982

Aliases

AV026557,
ENSMUSG00000029234, MGI:894407, NCBI:21982,
OFF:Tmem165, pFT27, Tmem165,
Tpardl, Tparl

Chr 5

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
182452	99	TTG ...	LAM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
173145	45	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
168989	39	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E, v6-5
570113	78	CTG ...	LVQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
1061273	63	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
169892	93	ATG ...	MPQ ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
564460	84	TTG ...	LKL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
559754	87	ATG ...	MLK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1310558	33	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
172986	33	TTG ...	LMT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Neutrophil, R1E
184759	132	GTG ...	VSE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, Neutrophil, NSC, R1E
1311729	105	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
182227	48	CTG ...	LHS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
167491	60	CTG ...	LAG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
180285	45	ATG ...	MGR ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
1311897	114	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
180990	207	TTG ...	LFG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, R1E, v6-5
167566	57	ATG ...	MFQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
182844	30	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1382921	102	TTG ...	LAF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E
177693	69	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
1063347	108	TTG ...	LKM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E
1311443	126	GTG ...	VVE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
904268	66	ATA ...	IHT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
183677	174	GTG ...	VYT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, R1E
559751	96	ATG ...	MGQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, NSC
559895	105	GTG ...	VVT ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, NSC, R1E

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