Transcript 167378

Transcript

ID CARD

MetamORF ID

167378

ENSMUST00000200827

Name

Letm1-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

33761712-33778644

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:56384

Aliases

ENSMUSG00000005299,
Letm1, MGI:1932557, NCBI:56384,
OFF:Letm1

Chr 5

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
184029	141	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
169241	150	GTG ...	VPF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
1468880	42	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
1019300	174	CTG ...	LRH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
176570	141	CTG ...	LVF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
177667	132	GTG ...	VVV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
179778	108	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
1802243	183	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
169347	138	GTG ...	VFV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
167377	216	GTG ...	VVV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
176412	300	GTG ...	VIE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
173898	105	CTG ...	LPV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
1800911	237	GTG ...	VYS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
1019321	147	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
175485	210	GTG ...	VRK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
184976	255	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
172659	213	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
175549	126	GTG ...	VPF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
172099	129	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E

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