Transcript 16700 | MetamORF

Transcript

ID CARD

MetamORF ID

16700

ENSMUST00000019854

Name

Mrpl24-201

Strand

Biotype

protein_coding

Start-end positions

87919506-87923672

CDS Start-stop positions

87921866-87923346

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:67707

Aliases

2010005E08Rik,
2810470K06Rik, 6720473G22Rik, AA407670,
ENSMUSG00000019710, MGI:1914957, Mrpl24,
NCBI:67707, OFF:Mrpl24

Chr 3

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
126816	54	CTG ...	LNF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
507737	39	CTG ...	LMK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
144434	201	CTG ...	LWT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1220016	33	AAG ...	KPP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
503140	36	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53109	201	CTG ...	LAK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
126768	33	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
140464	96	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
138196	132	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1222661	54	AGG ...	RRT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
135705	111	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
1223273	69	ACG ...	THV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
507742	51	TTG ...	LRG ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
54553	174	GTG ...	VRF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
507959	36	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
52999	189	TTG ...	LSV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
53225	177	CTG ...	LVR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
504144	39	CTG ...	LMK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
508736	63	GTG ...	VER ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Liver, Spleen_B_cell, v6-5
1224139	33	AAG ...	KTG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
16699	33	TTG ...	LAE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
136922	60	ATG ...	MAP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1220573	42	AAG ...	KSF ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

Export data