Transcript 16561 | MetamORF

Transcript

ID CARD

MetamORF ID

16561

ENSMUST00000134587

Name

Nckap1-204

Strand

Biotype

processed_transcript

Start-end positions

80548933-80554790

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:50884

Aliases

C79304,
ENSMUSG00000027002, H19, Hem-2,
Hem2, MGI:1355333, mh19,
mKIAA0587, Nap1, NCBI:50884,
Nckap1, OFF:Nckap1, p125Nap1

Chr 2

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1163466	111	TTG ...	LTV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, v6-5
1420002	72	TTG ...	LLN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
16560	189	TTG ...	LLN ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, R1E, Skin_tumor, Testis, v6-5
1167315	33	TTG ...	LTF ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, NSC, v6-5
1163834	99	CTG ...	LAQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, v6-5
16570	186	CTG ...	LNT ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, R1E, Skin_tumor, Testis, v6-5
1164978	78	CTG ...	LSR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, v6-5
104272	66	CTG ...	LKN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, v6-5
1164449	144	GTG ...	VNF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, v6-5
109846	57	CTG ...	LAL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, v6-5
1165578	81	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1162451	51	TTG ...	LYY ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, v6-5

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