Transcript 163308

Transcript

ID CARD

MetamORF ID

163308

ENSMUST00000042057

Name

Midn-201

Strand

Biotype

protein_coding

Start-end positions

80148272-80158368

CDS Start-stop positions

80150078-80156642

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:59090

Aliases

3000003C15Rik,
ENSMUSG00000035621, MGI:1890222, Midn,
NCBI:59090, OFF:Midn

Chr 10

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
209530	30	GTG ...	VTF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
237335	99	TTG ...	LKT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
1282959	204	ATA ...	IRR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
196462	33	CTG ...	LPG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
584294	156	TTG ...	LPR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
607670	87	CTG ...	LFS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
418679	261	ACG ...	TEP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	BMDC
620846	30	CTG ...	LDP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
440823	216	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
904354	156	AGG ...	RIP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
617433	39	CTG ...	LPC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
524139	132	TTG ...	LLR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
247132	129	GTG ...	VPY ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
4936	42	GTG ...	VTS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
1282042	75	AGG ...	RGL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
610918	114	TTG ...	LQS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
917458	93	ACG ...	TDH ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF Upstream	BMDC
427315	78	GTG ...	VRT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
507845	141	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1282740	96	AAG ...	KYP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
198093	57	GTG ...	VGG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
417297	66	ATA ...	IAC ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1283093	141	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1229354	87	ATC ...	IQQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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