Transcript 161703

Transcript

ID CARD

MetamORF ID

161703

ENSMUST00000133107

Name

Orc3-205

Strand

Biotype

processed_transcript

Start-end positions

34592073-34598620

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:50793

Aliases

ENSMUSG00000040044,
MGI:1354944, NCBI:50793, OFF:Orc3,
Orc3, Orc3l

Chr 4

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
511300	102	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
509600	123	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
1085055	192	CTG ...	LSC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
1084783	174	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
511657	159	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
165018	204	CTG ...	LFQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, v6-5
163423	243	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, v6-5
164949	219	CTG ...	LLC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, v6-5
513123	117	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
510911	75	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
164836	285	CTG ...	LIF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, R1E, v6-5
509750	180	CTG ...	LHE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
161702	216	TTG ...	LCV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, v6-5
164197	228	GTG ...	VSS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, v6-5
512923	72	GTG ...	VLI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
1888813	99	CTG ...	LTN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E

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