Transcript 16101 | MetamORF

Transcript

ID CARD

MetamORF ID

16101

ENSMUST00000129265

Name

Anapc2-203

Strand

Biotype

processed_transcript

Start-end positions

25272595-25276371

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:99152

Aliases

9230107K09Rik,
AL024279, Anapc2, Apc2,
Emi4, ENSMUSG00000026965, Imi4,
MGI:2139135, mKIAA1406, NCBI:99152,
OFF:Anapc2

Chr 2

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1459694	66	TTG ...	LGC ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, R1E
1365901	51	ATG ...	MRS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, R1E
1053806	150	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
47544	276	TTG ...	LRG ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1054309	174	CTG ...	LER ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
103032	87	CTG ...	LSM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, R1E
732080	36	ATG ...	MSA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
728088	219	CTG ...	LLT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, v6-5
44968	99	TTG ...	LQS ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
46295	87	CTG ...	LCA ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
740014	60	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, v6-5
45558	204	TTG ...	LRV ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
729539	177	TTG ...	LVG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, NSC, v6-5
113294	129	TTG ...	LPR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, MEF, R1E
1053727	132	CTG ...	LRR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, R1E
110104	183	CTG ...	LSW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, MEF, R1E
107885	81	ATG ...	MSP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, R1E
497934	186	GTG ...	VFL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, R1E, Spleen_B_cell
493817	111	ATG ...	MPA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
728365	207	GTG ...	VVG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Neutrophil, R1E, v6-5
1054605	138	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1872653	99	ATG ...	MDS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
96096	36	CTG ...	LDR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
1548839	66	GTG ...	VPW ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
96478	111	ATG ...	MPS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, R1E
493276	117	CTG ...	LGT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell, v6-5
99034	39	CTG ...	LEC ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, R1E
16100	93	GTG ...	VVR ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC, Skin_tumor
49055	264	CTG ...	LFF ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1052388	177	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
732364	168	TTG ...	LAK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, NSC, v6-5

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