Transcript 1609 | MetamORF

Transcript

ID CARD

MetamORF ID

1609

ENSMUST00000115271

Name

Sema3c-202

Strand

Biotype

retained_intron

Start-end positions

17694202-17730265

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:20348

Aliases

1110036B02Rik,
ENSMUSG00000028780, MGI:107557, NCBI:20348,
OFF:Sema3c, Sema3c, Semae,
SemE

Chr 5

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
167551	51	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
168355	30	CTG ...	LCL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
177412	93	CTG ...	LTT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
174909	117	CTG ...	LHR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
1608	45	ATG ...	MGD ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
172938	144	CTG ...	LIV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
174722	150	GTG ...	VSS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF
176927	105	CTG ...	LGE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
169025	57	CTG ...	LTK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
173405	63	CTG ...	LKA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
181426	69	CTG ...	LWT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
172791	258	GTG ...	VAV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
1664875	99	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
168752	72	TTG ...	LLW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
178353	249	GTG ...	VTD ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
167982	72	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
182791	57	GTG ...	VPR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
172647	156	TTG ...	LYV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
172962	210	GTG ...	VRA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
173798	69	CTG ...	LFK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
167544	48	CTG ...	LMG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
180776	33	TTG ...	LPL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1661347	72	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
170428	51	CTG ...	LLM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
172288	63	CTG ...	LCG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
170589	177	CTG ...	LGA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
173847	75	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
179245	84	CTG ...	LPY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
170853	54	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1235459	60	ATT ...	ILT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
184898	69	TTG ...	LSL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
180458	60	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF

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