Transcript 15941 | MetamORF

Transcript

ID CARD

MetamORF ID

15941

ENSMUST00000112920

Name

Rabgap1-203

Strand

Biotype

protein_coding

Start-end positions

37452267-37566454

CDS Start-stop positions

37469427-37564887

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:227800

Aliases

ENSMUSG00000035437,
Gapcena, MGI:2385139, mKIAA4104,
NCBI:227800, OFF:Rabgap1, Rabgap1

Chr 2

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
98333	39	ATG ...	MSE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
101751	66	ATG ...	MMK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
120926	93	CTG ...	LRV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
742028	75	ATG ...	MYP ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
95475	69	CTG ...	LKV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
111868	60	GTG ...	VKD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
104622	117	GTG ...	VSE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
123041	78	TTG ...	LHS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
731890	30	CTG ...	LCF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
118002	87	GTG ...	VTV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
95435	105	ATG ...	MMG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
744946	57	ATG ...	MQR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
125497	138	TTG ...	LEK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
93286	102	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
965322	39	ATA ...	IMG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
105142	69	GTG ...	VKE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
96058	174	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
815692	30	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
101435	135	TTG ...	LEK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
99881	36	ATG ...	MGV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
735857	69	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
121385	117	GTG ...	VSE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
121086	120	ATG ...	MSE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
738907	57	ATG ...	MKG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC
101861	90	GTG ...	VKI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
124950	93	GTG ...	VKI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
118521	33	GTG ...	VMM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
123185	126	GTG ...	VSH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
115852	87	GTG ...	VTV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
105255	66	TTG ...	LVF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
124178	177	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
97450	30	GTG ...	VMM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
99747	33	ATG ...	MSF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
124064	102	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
94200	78	TTG ...	LHS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
125542	105	ATG ...	MMG ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, v6-5
125604	69	CTG ...	LKV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
106908	138	CTG ...	LLE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
123335	39	ATG ...	MGV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
123349	66	GTG ...	VKD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
1369556	75	GTG ...	VVP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
114143	72	ATG ...	MVK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
124701	84	TTG ...	LSW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
1502724	30	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
745880	36	TTG ...	LPV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
93326	57	ATG ...	MRH ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
15940	30	TTG ...	LHC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
1163806	39	CTG ...	LEP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
121418	282	ATG ...	MVK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
743202	87	ATG ...	MGR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
110025	33	CTG ...	LKY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
746695	66	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
125129	153	ATG ...	MTR ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, v6-5
126210	285	ATG ...	MMV ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
98425	93	CTG ...	LRV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
122382	141	CTG ...	LLE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
101449	60	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
101929	81	TTG ...	LSW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
971100	42	ATA ...	IMG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
742931	33	ATG ...	MSF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
123865	60	ATG ...	MRH ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
1549765	51	CTG ...	LHH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
96143	60	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
106069	123	GTG ...	VSH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1161133	48	GTG ...	VSD ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
95794	150	ATG ...	MTR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5

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