Transcript 155369

Transcript

ID CARD

MetamORF ID

155369

ENSMUST00000129181

Name

Sdhb-203

Strand

Biotype

processed_transcript

Start-end positions

140961401-140976796

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:67680

Aliases

0710008N11Rik,
ENSMUSG00000009863, MGI:1914930, NCBI:67680,
OFF:Sdhb, Sdhb

Chr 4

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
824401	66	CTG ...	LSS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
509663	102	CTG ...	LLL ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E
823506	123	TTG ...	LDA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil
508985	126	TTG ...	LSN ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E
511232	84	CTG ...	LKK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E
1652403	81	CTG ...	LAI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
1016482	159	CTG ...	LAC ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, Neutrophil, NSC
1655242	84	ATG ...	MLA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF
152642	96	CTG ...	LQL ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E
822770	42	CTG ...	LQS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E
510141	114	TTG ...	LWL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, NSC, R1E
823776	36	CTG ...	LSP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, MEF, NSC
155368	45	GTG ...	VRT ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC
158370	33	CTG ...	LPF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, NSC
514061	42	CTG ...	LEI ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, MEF, Neutrophil, NSC
56254	90	CTG ...	LSR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, NSC, R1E
555382	90	GTG ...	VHT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
160633	99	CTG ...	LLQ ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E
148236	72	TTG ...	LPF ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, MEF, Neutrophil, NSC, R1E
824530	126	GTG ...	VLD ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil
1017186	93	GTG ...	VDS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
511925	144	GTG ...	VAF ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E

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