Transcript 155142

Transcript

ID CARD

MetamORF ID

155142

ENSMUST00000148223

Name

Sigmar1-207

Strand

Biotype

processed_transcript

Start-end positions

41739101-41745072

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:18391

Aliases

ENSMUSG00000036078,
MGI:1195268, NCBI:18391, OFF:Sigmar1,
Oprs1, Sig1R, sigma1R,
Sigmar1

Chr 4

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
163366	219	ATG ...	MAI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
511286	33	GTG ...	VLF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
148349	87	ATG ...	MDH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver
548344	105	TTG ...	LYT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, v6-5
155316	69	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
154050	93	GTG ...	VGM ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver, v6-5
155707	39	CTG ...	LVV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
1082166	129	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
155141	204	CTG ...	LSP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, NSC, v6-5
551770	162	GTG ...	VEY ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, v6-5
549040	189	CTG ...	LEW ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, NSC, v6-5
160744	111	GTG ...	VGR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver, v6-5
153865	150	GTG ...	VGT ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	E14, NSC, v6-5
150697	33	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
162915	258	CTG ...	LST ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
551692	129	CTG ...	LFF ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, v6-5
1376884	123	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
153675	93	CTG ...	LEK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, v6-5
153061	66	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
154076	63	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver
1229535	114	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1378980	135	GTG ...	VDG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, NSC

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