Transcript 15053 | MetamORF

Transcript

ID CARD

MetamORF ID

15053

ENSMUST00000017851

Name

Serinc3-201

Strand

Biotype

protein_coding

Start-end positions

163623272-163645131

CDS Start-stop positions

163625441-163645036

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:26943

Aliases

AA959945,
AA960047, AIGP1, DIFF33,
ENSMUSG00000017707, MGI:1349457, NCBI:26943,
OFF:Serinc3, Serinc3, Tde1,
TMS-1

Chr 2

ORFs

81 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1206908	66	AAG ...	KLC ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1216260	162	ATC ...	IEW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
46438	117	GTG ...	VVQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14, Spleen_B_cell, Testis
48943	57	TTG ...	LLE ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell, Testis, v6-5
48438	75	GTG ...	VTV ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
48676	78	CTG ...	LHR ...	Ribo-seq	CTG	weak	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, Neutrophil, Spleen_B_cell, Testis, v6-5
1215964	150	AAG ...	KET ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
118004	36	ATG ...	MNL ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell
493448	90	GTG ...	VPP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Spleen_B_cell
48252	87	GTG ...	VTC ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Testis
969139	102	ACG ...	TPQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
48378	54	CTG ...	LEC ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell, Testis, v6-5
47573	63	CTG ...	LAS ...	Ribo-seq	CTG	strong	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, Testis
16158	51	TTG ...	LHH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, R1E, Skin_tumor
967650	36	ATC ...	IMS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
98482	45	TTG ...	LDL ...	Ribo-seq	TTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
967536	33	ATC ...	IPE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
971076	87	AAG ...	KFR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
43926	63	CTG ...	LCI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Testis
111124	45	ATG ...	MRR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
108396	33	ATG ...	MLR ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, v6-5
968811	57	ATT ...	IQL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
970702	171	ACG ...	TPQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
118062	30	CTG ...	LSG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell
48097	75	TTG ...	LVL ...	Ribo-seq	TTG	strong	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
735777	36	ATG ...	MPN ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
813325	129	TTG ...	LRI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
967781	42	ACG ...	TTA ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1215479	69	AAG ...	KIP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
967723	93	AAG ...	KIV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
47041	60	TTG ...	LLL ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
1209613	57	ATC ...	IGS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
50606	105	TTG ...	LDL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
47306	111	TTG ...	LIQ ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Testis
97752	36	ATG ...	MMK ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
969834	63	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
49343	45	CTG ...	LTT ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
49696	129	ATG ...	MLP ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, Testis, v6-5
113407	72	CTG ...	LCL ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
94448	51	ATG ...	MGK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
970540	81	AGG ...	RNI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
50908	198	TTG ...	LRI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, Neutrophil, Spleen_B_cell, Testis
45848	147	CTG ...	LDS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, C2C12, E14, Liver, MEF, Testis
49002	87	CTG ...	LVC ...	Ribo-seq	CTG	strong	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
96067	42	CTG ...	LWP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
15052	54	GTG ...	VHH ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Skin_tumor, Testis
44689	81	CTG ...	LGV ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
47236	78	TTG ...	LLR ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
50060	120	GTG ...	VLQ ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
96931	33	ATG ...	MSA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC
45709	69	GTG ...	VLS ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
970054	75	ATC ...	ISL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
46105	138	GTG ...	VKE ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Testis
43838	57	GTG ...	VIP ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
966923	192	TTG ...	LWL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
51290	126	CTG ...	LPC ...	Ribo-seq	CTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
49692	105	TTG ...	LCP ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
46584	36	TTG ...	LFS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, Testis, v6-5
964299	54	ATT ...	IMG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
45264	96	CTG ...	LVV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, Spleen_B_cell, Testis
108938	45	ATG ...	MEP ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
109151	39	CTG ...	LPM ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
46098	129	GTG ...	VAS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain, E14, Liver, Spleen_B_cell, Testis
114736	60	TTG ...	LVI ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
93561	63	CTG ...	LQI ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
116378	45	TTG ...	LLL ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
95557	42	TTG ...	LGT ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
48686	129	CTG ...	LQS ...	Ribo-seq	CTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
1213122	36	AAG ...	KIP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
15664	57	GTG ...	VVH ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, C2C12, Liver, MEF, Skin_tumor, Testis
495389	72	CTG ...	LDS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Spleen_B_cell
971959	66	ATC ...	IPE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
45127	36	TTG ...	LCC ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, Neutrophil, Spleen_B_cell, Testis, v6-5
964970	33	ATC ...	IFL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
48762	75	CTG ...	LRC ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
51261	63	TTG ...	LFS ...	Ribo-seq	TTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
108546	33	ATG ...	MKR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, Spleen_B_cell
736271	39	CTG ...	LMP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
969927	138	ATC ...	IQQ ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
50805	117	TTG ...	LQF ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
116604	45	TTG ...	LLW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain

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