Transcript 15048 | MetamORF

Transcript

ID CARD

MetamORF ID

15048

ENSMUST00000109468

Name

Top1-201

Strand

Biotype

protein_coding

Start-end positions

160645888-160722764

CDS Start-stop positions

160646230-160721554

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:21969

Aliases

AI467334,
D130064I21Rik, ENSMUSG00000070544, MGI:98788,
NCBI:21969, OFF:Top1, Top-1,
Top1

Chr 2

ORFs

125 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
971486	108	ATC ...	IWT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
497352	54	GTG ...	VWT ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1214659	33	ATA ...	INI ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
971113	30	ATT ...	IPR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
497572	195	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
501073	123	GTG ...	VGP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
501311	225	TTG ...	LDG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
733784	42	ATG ...	MAI ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
494007	237	CTG ...	LLH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
501280	153	CTG ...	LRT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
746598	81	TTG ...	LQK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC
971184	165	AAG ...	KPQ ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
971725	171	AAG ...	KFK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
15390	66	TTG ...	LPW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor, v6-5
971607	123	ATA ...	IKI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
498813	207	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
45079	129	CTG ...	LKR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
498369	192	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
15047	93	GTG ...	VCG ...	Ribo-seq	GTG	moderate	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1211863	120	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
114914	54	GTG ...	VGR ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, v6-5
1211200	93	ATA ...	ING ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
115903	111	CTG ...	LMR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, NSC, R1E, v6-5
1213136	138	ATA ...	IKI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
501261	174	ATG ...	MAA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
1208144	54	AGG ...	RPR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
412780	99	AAG ...	KIN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
499404	75	ATG ...	MWW ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, Spleen_B_cell, v6-5
44272	87	ATG ...	MAA ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
733274	45	ATG ...	MMA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC
969451	87	ATC ...	IER ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
501548	249	ATG ...	MRR ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
1215390	156	AGG ...	RMV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1211382	69	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
500908	141	TTG ...	LTF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
1206427	108	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
492977	120	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
1501390	33	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
1214969	183	ATT ...	IYT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
495917	171	ATG ...	MRR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
497476	132	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, Neutrophil
110657	57	TTG ...	LQF ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
970823	96	ATA ...	IIR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
496108	42	GTG ...	VRK ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC, Spleen_B_cell
733043	72	GTG ...	VPI ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
120110	228	CTG ...	LII ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF
110318	108	ATG ...	MRM ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
1208170	93	ATA ...	IKK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
743289	153	ATG ...	MWW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
1216534	78	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1215080	237	AAG ...	KER ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
968529	96	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
412710	156	CTG ...	LSV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Neutrophil
1215755	159	AGG ...	RSM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1211282	57	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
746659	165	ATG ...	MVR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
494364	216	CTG ...	LFS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
742448	153	ATG ...	MVN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF
496525	54	CTG ...	LGR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, NSC, Spleen_B_cell, v6-5
107993	96	ATG ...	MRL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
48773	51	CTG ...	LRM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, Spleen_B_cell
1216594	66	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
49717	96	ATG ...	MAA ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Spleen_B_cell, Testis
1211545	42	ACG ...	TLS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
734663	33	TTG ...	LLL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
964165	66	ATC ...	IEL ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
50354	138	CTG ...	LKR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
968688	78	ATA ...	IYH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
970294	222	ATA ...	INL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
496318	63	TTG ...	LTF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, v6-5
1215484	147	ATA ...	IKI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
970365	156	ATC ...	IER ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
967523	36	ATT ...	ISK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
970479	150	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1206709	69	ATA ...	IRS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
15355	57	CTG ...	LEV ...	Ribo-seq	CTG	strong	12	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, NSC, R1E, Skin_tumor, v6-5
966487	78	ATA ...	ITV ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1210438	45	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
499161	81	CTG ...	LFV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
731690	72	ATG ...	MIT ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
971873	108	ATA ...	ITK ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
497424	87	ATG ...	MVR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
497519	141	CTG ...	LWA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC, R1E, Spleen_B_cell, v6-5
45586	84	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Testis
502223	135	TTG ...	LPW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell, v6-5
741854	105	CTG ...	LSQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, v6-5
1209945	81	AGG ...	RSM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1215727	69	AAG ...	KRN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1209253	30	ATC ...	IGK ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
110765	102	ATG ...	MYQ ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
1214918	162	AGG ...	RKR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
497511	129	GTG ...	VAA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Neutrophil
500283	192	TTG ...	LEF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
47217	81	CTG ...	LSQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Testis
970272	150	AGG ...	RTS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
119457	57	ATG ...	MVG ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
743569	63	GTG ...	VEM ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, v6-5
967826	99	ATA ...	IKI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1215292	195	ATA ...	ISR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
106661	99	CTG ...	LDI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E, v6-5
1208956	159	AAG ...	KER ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1217272	117	ATA ...	IKK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
501238	219	CTG ...	LWA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
1207485	129	ATG ...	MVN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
745746	108	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, v6-5
1207617	39	AAG ...	KNV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
969584	81	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
967623	48	AGG ...	REP ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1504202	42	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
965906	123	ACG ...	TQR ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
44613	57	ATG ...	MNL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell
971254	42	ATC ...	IST ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
98012	30	ATG ...	MTK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1209089	105	ATT ...	IYT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1211302	36	ATA ...	III ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1213715	30	ATC ...	IQK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
964479	36	ATC ...	ISI ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
968729	72	ATA ...	IIR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
501008	132	CTG ...	LGR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, v6-5
744877	69	TTG ...	LTT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC
501015	87	ATG ...	MAS ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
1215496	93	AGG ...	RKM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1214023	33	ATT ...	IER ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
735489	60	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, NSC, R1E, v6-5
965947	30	ATA ...	IES ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

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