Transcript 149610

Transcript

ID CARD

MetamORF ID

149610

ENSMUST00000030734

Name

Sf3a3-201

Strand

Biotype

protein_coding

Start-end positions

124714776-124732460

CDS Start-stop positions

124714895-124732265

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:75062

Aliases

4930512K19Rik,
60kDa, ENSMUSG00000028902, MGI:1922312,
NCBI:75062, OFF:Sf3a3, Sf3a3

Chr 4

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1733827	69	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1227512	39	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
510290	72	GTG ...	VVR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
1466648	75	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
557075	87	ATG ...	MRS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1230459	57	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
512968	90	GTG ...	VFP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell, v6-5
556016	63	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
509642	126	CTG ...	LRA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
145630	66	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, v6-5
1685404	138	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
149609	30	ATG ...	MTA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
509351	111	CTG ...	LAE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
515518	249	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell, v6-5
1555216	87	CTG ...	LWE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
513611	129	ATG ...	MLR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	B_cell, Glioma, Liver, MEF, MESC, Spleen_B_cell
557866	102	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
510009	54	GTG ...	VGT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
159604	39	TTG ...	LIS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, v6-5
515869	84	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
514261	267	CTG ...	LRG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Spleen_B_cell, v6-5
514485	177	ATG ...	MFS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
512622	150	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1685285	114	ATG ...	MLW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
514173	144	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
151535	51	TTG ...	LLS ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1225123	30	ATA ...	IMA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
152078	51	ATG ...	MVA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, v6-5
550260	45	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
515398	183	ATG ...	MKM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
824199	30	GTG ...	VAK ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, Neutrophil, R1E
551001	66	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1233158	237	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
546241	42	ATG ...	MLW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
511251	69	CTG ...	LRG ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1379691	45	CTG ...	LAV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1232297	255	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
151296	63	ATG ...	MKR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, v6-5
1553813	54	ATG ...	MRS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
547191	57	ATG ...	MLS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E
508868	78	GTG ...	VLV ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
549895	36	GTG ...	VCQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
512567	63	GTG ...	VRS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5

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