Transcript 14898 | MetamORF

Transcript

ID CARD

MetamORF ID

14898

ENSMUST00000161912

Name

Rsu1-207

Strand

Biotype

retained_intron

Start-end positions

13167473-13271308

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:20163

Aliases

ENSMUSG00000026727,
MGI:103040, NCBI:20163, OFF:Rsu1,
rsp-1, Rsu1, RsuI

Chr 2

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
96752	48	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
968902	33	ATC ...	ITP ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
495513	57	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
14897	123	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
969997	132	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
113286	132	TTG ...	LNT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
498028	72	CTG ...	LTS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
966993	69	ATC ...	IAL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
499285	126	CTG ...	LVR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Spleen_B_cell
966976	114	AGG ...	RSS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
97463	123	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
969519	54	ACG ...	TIL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
412737	81	CTG ...	LIQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
44977	54	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
99305	63	CTG ...	LNE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
96328	129	TTG ...	LDL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
966286	153	GTG ...	VCS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
44297	93	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
495080	75	TTG ...	LLT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
966981	222	AAG ...	KKL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
112684	93	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
965915	255	AGG ...	RDN ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
412084	42	AGG ...	RSL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
964918	63	ATC ...	IEE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
964359	231	AAG ...	KSL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
412080	87	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1209623	99	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
968600	48	AGG ...	RNC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
15215	102	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor

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