Transcript 14895 | MetamORF

Transcript

ID CARD

MetamORF ID

14895

ENSMUST00000143252

Name

Angptl2-203

Strand

Biotype

retained_intron

Start-end positions

33216073-33244519

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:26360

Aliases

AI593246,
Angptl2, Arp2, AW260363,
ENSMUSG00000004105, MGI:1347002, NCBI:26360,
OFF:Angptl2

Chr 2

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
736941	159	CTG ...	LEP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
736428	270	CTG ...	LGL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF
736530	279	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
14894	87	CTG ...	LAG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Skin_tumor
736982	222	CTG ...	LLV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
728059	84	ATG ...	MTL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
737340	219	CTG ...	LVT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, v6-5
736043	126	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
739638	264	CTG ...	LEN ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, v6-5
735441	171	GTG ...	VKP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
739051	33	ATG ...	MVT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
730581	207	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
736881	183	ATG ...	MPV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
15217	66	TTG ...	LDC ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Skin_tumor
736622	174	CTG ...	LVK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
735600	66	CTG ...	LSS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
730522	39	CTG ...	LST ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
738826	45	ATG ...	MAL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
736506	96	GTG ...	VTR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
734352	147	CTG ...	LMQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
738426	192	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
15394	42	ATG ...	MVS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Skin_tumor
741368	60	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
729676	216	CTG ...	LQA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
729981	78	CTG ...	LEV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
738291	69	ATG ...	MER ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
15100	63	CTG ...	LAD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Skin_tumor, v6-5
15493	39	GTG ...	VST ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Skin_tumor
739995	189	CTG ...	LSM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
728906	207	CTG ...	LED ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
731801	246	CTG ...	LTN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
734467	45	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
731372	132	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
732887	54	TTG ...	LGT ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3

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