Transcript 148936

Transcript

ID CARD

MetamORF ID

148936

ENSMUST00000154581

Name

Hp1bp3-212

Strand

Biotype

retained_intron

Start-end positions

138217268-138229744

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:15441

Aliases

ENSMUSG00000028759,
Hp1bp3, Hp1bp74, MGI:109369,
NCBI:15441, OFF:Hp1bp3

Chr 4

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1555176	117	CTG ...	LCD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
897133	48	ATA ...	ICL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
512604	78	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
1555389	33	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
897627	30	ATC ...	ISR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
147937	39	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
513520	96	CTG ...	LGD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
899971	33	ACG ...	TES ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
413986	54	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
824081	33	CTG ...	LKG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
897714	33	ATC ...	IYL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
899792	69	ATT ...	ILP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
899339	111	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
896354	51	AGG ...	RKT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
548437	57	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
509967	72	TTG ...	LWL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
551122	36	GTG ...	VNS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
825995	51	CTG ...	LIC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
148935	33	ATG ...	MEV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain
159056	90	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
898540	291	AAG ...	KKV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
512897	96	CTG ...	LKP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC
869375	81	TTG ...	LRF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
898932	30	ATC ...	ISL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
549605	36	GTG ...	VVI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
868396	96	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
899432	33	AAG ...	KIP ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
508932	36	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

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