Transcript 14860 | MetamORF

Transcript

ID CARD

MetamORF ID

14860

ENSMUST00000028921

Name

Xrn2-201

Strand

Biotype

protein_coding

Start-end positions

147012996-147078000

CDS Start-stop positions

147013122-147077548

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:24128

Aliases

ENSMUSG00000027433,
MGI:894687, NCBI:24128, OFF:Xrn2,
Xrn2

Chr 2

ORFs

90 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1682249	93	ATG ...	MHH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1643597	87	GTG ...	VKL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
500665	102	CTG ...	LNC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
1637800	108	CTG ...	LVT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
501533	111	ATG ...	MCH ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
500113	207	CTG ...	LMR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
815755	87	GTG ...	VTV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
1637270	33	ATG ...	MWS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
15792	75	GTG ...	VLF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E, Skin_tumor, v6-5
500310	204	ATG ...	MRN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
499157	42	TTG ...	LRI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
742553	132	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14
497605	33	TTG ...	LWM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1637654	36	ATG ...	MMW ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1682331	84	TTG ...	LPQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1638761	60	TTG ...	LMP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
739387	162	GTG ...	VPA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF
1215742	66	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
496409	60	CTG ...	LCF ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, NSC, Spleen_B_cell
744382	81	GTG ...	VSQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF
1637328	45	ATG ...	MGS ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1644125	81	TTG ...	LRI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1645458	90	TTG ...	LVK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
969961	291	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
495546	93	ATG ...	MEP ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell
744839	180	GTG ...	VPA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell
494107	45	GTG ...	VVL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
103927	36	TTG ...	LEL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1161118	51	GTG ...	VMF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
742576	120	CTG ...	LFR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell
744221	48	CTG ...	LNL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
1680215	45	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
743193	132	GTG ...	VLF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
814323	123	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, R1E
1641323	105	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1724211	36	GTG ...	VSR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1682239	63	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
493253	30	GTG ...	VTI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Neutrophil, Spleen_B_cell
730382	105	CTG ...	LLF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, v6-5
1637707	84	ATG ...	MGG ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
812692	42	CTG ...	LVG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
735312	114	CTG ...	LAR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, v6-5
964176	240	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
1549284	108	ATG ...	MQL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
496289	90	CTG ...	LNC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
1550229	183	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
495085	51	CTG ...	LEV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, NSC, Spleen_B_cell
1549043	102	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1640023	33	TTG ...	LEA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
108647	30	CTG ...	LNL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1640168	54	TTG ...	LKV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
14859	57	TTG ...	LDT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E, Skin_tumor, v6-5
971926	186	AGG ...	RLF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
812507	60	ATG ...	MMN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
740941	93	ATG ...	MLH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
815652	102	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
744239	114	TTG ...	LDT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
496697	48	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
495402	48	TTG ...	LLY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
496087	51	TTG ...	LVK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
500545	114	TTG ...	LMC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1680930	75	ATG ...	MHH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
727868	165	CTG ...	LVP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF
494184	51	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1462654	96	TTG ...	LIV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1546423	99	ATG ...	MRN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
735301	102	CTG ...	LFR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, v6-5
1161388	57	TTG ...	LEV ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1681730	66	TTG ...	LPQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
814211	186	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
1550592	141	ATG ...	MSF ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1214265	42	ATC ...	IHP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1462331	102	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
495145	51	CTG ...	LEA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
502225	213	ATG ...	MQL ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
1643503	72	TTG ...	LKV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1210873	111	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
499530	99	ATG ...	MCH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
741365	168	GTG ...	VLV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF
742315	183	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell
741689	93	GTG ...	VKV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
497884	102	TTG ...	LMC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
1548486	84	TTG ...	LMW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1207609	63	ATC ...	ISL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
743059	123	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell
968491	279	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
1638144	57	ATG ...	MPV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
15079	39	GTG ...	VLE ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
1777360	51	CTG ...	LGK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1212723	96	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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