Transcript 14836 | MetamORF

Transcript

ID CARD

MetamORF ID

14836

ENSMUST00000145380

Name

Ckmt1-208

Strand

Biotype

retained_intron

Start-end positions

121358659-121360361

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:12716

Aliases

Ckmt1,
ENSMUSG00000000308, MGI:99441, mi-CK,
mia-CK, Mt-CK, NCBI:12716,
OFF:Ckmt1, ScCKmit, U-MtCK,
UbCKmit

Chr 2

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
15323	102	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
15436	108	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
14835	72	GTG ...	VHP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
15040	108	GTG ...	VDN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
15815	78	CTG ...	LEW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
15466	135	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
15932	138	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
15299	45	CTG ...	LLN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
15912	111	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
14887	87	GTG ...	VIQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
15890	87	TTG ...	LDT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
15756	69	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
16054	189	CTG ...	LTP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
15491	51	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
15533	153	CTG ...	LHG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
16015	42	CTG ...	LNG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
15623	99	CTG ...	LFD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor

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