Transcript 14833 | MetamORF

Transcript

ID CARD

MetamORF ID

14833

ENSMUST00000028098

Name

Orc4-201

Strand

Biotype

protein_coding

Start-end positions

48902824-48949276

CDS Start-stop positions

48905411-48940383

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:26428

Aliases

ENSMUSG00000026761,
MGI:1347043, mMmORC4, NCBI:26428,
OFF:Orc4, Orc4, Orc4l,
Orc4P

Chr 2

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
812779	66	GTG ...	VHA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
744163	141	CTG ...	LQN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
814658	30	TTG ...	LEC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
117840	39	TTG ...	LYM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
498128	108	CTG ...	LCA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
95906	60	ATG ...	MEK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1216635	78	AGG ...	RHS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
122822	39	TTG ...	LPD ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Neutrophil, v6-5
112314	87	TTG ...	LSY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
120080	72	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
123883	96	ATG ...	MFI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1215061	126	ATA ...	IRL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
121387	33	ATG ...	MVC ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, v6-5
111092	69	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
14832	45	CTG ...	LYS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
124616	69	GTG ...	VKD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
743800	39	GTG ...	VST ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
745399	117	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
110358	33	TTG ...	LLR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1370369	33	CTG ...	LSY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1216209	54	ATT ...	ILR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
125101	63	ATG ...	MEK ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
125154	36	ATG ...	MDS ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
122759	90	TTG ...	LSY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
745436	81	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
745069	114	CTG ...	LRD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
809734	36	ATG ...	MLG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	B_cell, Glioma, Liver, MEF, MESC
124632	39	TTG ...	LLD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1372347	105	ATG ...	MKR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
104907	33	CTG ...	LFI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1644101	114	ATG ...	MTY ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
122856	111	ATG ...	MHM ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
98293	57	CTG ...	LQN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
123378	36	TTG ...	LDH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
745546	69	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
810315	111	TTG ...	LLC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
746983	63	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
15999	33	TTG ...	LDH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
113549	30	CTG ...	LRD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
16315	48	CTG ...	LYS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Skin_tumor
807887	33	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
122846	105	ATG ...	MQS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain

Export data