Transcript 14804 | MetamORF

Transcript

ID CARD

MetamORF ID

14804

ENSMUST00000028607

Name

Caprin1-201

Strand

Biotype

protein_coding

Start-end positions

103762941-103797649

CDS Start-stop positions

103766799-103796940

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:53872

Aliases

AL022980,
Caprin-1, Caprin1, ENSMUSG00000027184,
Gpiap, Gpiap1, MGI:1858234,
Mmgpip137, NCBI:53872, OFF:Caprin1,
P137, rng105

Chr 2

ORFs

79 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
496989	33	ATG ...	MQL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, R1E
862079	51	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
50118	69	GTG ...	VDH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, R1E
119107	108	TTG ...	LNQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
51456	204	ATG ...	MMV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
811937	51	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
811786	36	CTG ...	LRP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, R1E
51541	90	ATG ...	MSS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, R1E
49912	105	GTG ...	VRG ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E
49448	51	ATG ...	MLR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E
105567	69	CTG ...	LLL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
500703	255	CTG ...	LRP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell
95498	48	TTG ...	LKI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, R1E
731554	102	CTG ...	LRP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF
14803	51	CTG ...	LYL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, Skin_tumor
121867	144	CTG ...	LSQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
493956	72	CTG ...	LLL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E
45566	114	CTG ...	LVT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
47297	81	CTG ...	LAF ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, R1E
51298	63	ATG ...	MLR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E
51627	171	TTG ...	LPN ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
48688	156	TTG ...	LAL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
1215896	30	CTG ...	LCV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
122676	51	GTG ...	VGF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, R1E
732169	75	GTG ...	VVI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, R1E
50344	78	CTG ...	LGR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, R1E
496101	102	GTG ...	VFS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E
51505	120	TTG ...	LSF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E
98147	39	ATG ...	MLQ ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, R1E
498674	81	GTG ...	VRR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, R1E
494538	60	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
497350	36	TTG ...	LQR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
51054	165	GTG ...	VVI ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
494258	81	TTG ...	LIA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E
499645	108	TTG ...	LSV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E
50790	123	CTG ...	LVT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
49848	114	GTG ...	VYK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E
15985	45	TTG ...	LSY ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Skin_tumor
499447	78	ATG ...	MPY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
118417	54	GTG ...	VVR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
106286	51	GTG ...	VGF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E
95379	45	ATG ...	MDT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
50261	81	ATG ...	MNM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, R1E
50985	108	ATG ...	MDI ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, R1E
976858	132	AAG ...	KNT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
117859	51	GTG ...	VRR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
107671	54	GTG ...	VYK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
976871	177	AAG ...	KTN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
101239	114	ATG ...	MMV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
494490	48	GTG ...	VRR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
740390	111	ATG ...	MVT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
121017	114	GTG ...	VRL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
44468	42	GTG ...	VGY ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
122192	93	ATG ...	MSI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
50200	135	CTG ...	LYR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, R1E
50400	183	CTG ...	LNL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
814297	111	GTG ...	VPF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
115954	48	GTG ...	VRR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
112897	60	CTG ...	LNL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
48422	63	GTG ...	VEC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E
50774	201	ATG ...	MVT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E
49074	123	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
44183	93	GTG ...	VRG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, R1E
15772	45	CTG ...	LRR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, R1E, Skin_tumor
15848	33	ATG ...	MYW ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, Skin_tumor
497993	42	GTG ...	VEG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
109376	33	TTG ...	LIL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
111610	48	TTG ...	LPN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
496495	90	ATG ...	MSI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, R1E
493370	57	ATG ...	MGC ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
746668	42	ATG ...	MQL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, R1E
47017	144	ATG ...	MDP ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, R1E
51325	75	ATG ...	MPQ ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, R1E
50983	150	TTG ...	LRS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, R1E
971405	183	ACG ...	TSS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
498188	111	TTG ...	LLS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E
51415	141	CTG ...	LLP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E
105896	42	CTG ...	LGQ ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, R1E
119418	33	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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