Transcript 14793 | MetamORF

Transcript

ID CARD

MetamORF ID

14793

ENSMUST00000017065

Name

Srsf6-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

162931562-162935026

CDS Start-stop positions

162931671-162932966

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:67996

Aliases

1210001E11Rik,
AI314910, AW146126, ENSMUSG00000016921,
MGI:1915246, NCBI:67996, OFF:Srsf6,
Sfrs6, Srsf6

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
115385	147	GTG ...	VIE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
497660	81	GTG ...	VRR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
111228	99	CTG ...	LDG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1163551	129	TTG ...	LKR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, v6-5
95140	33	GTG ...	VLW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, v6-5
96879	108	TTG ...	LDK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
15219	78	GTG ...	VDT ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, NSC, Skin_tumor, v6-5
47499	111	CTG ...	LTG ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil, v6-5
15754	87	GTG ...	VVE ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Downstream NMD sORF	MEF, NSC, Skin_tumor, v6-5
809463	102	TTG ...	LCV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, NSC, v6-5
46056	135	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
46153	57	ATG ...	MPT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
15409	96	GTG ...	VIK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream NMD sORF	MEF, NSC, Skin_tumor, v6-5
100099	48	ATG ...	MPC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
48832	63	ATG ...	MGS ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil, v6-5
99113	33	ATG ...	MLT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
492628	30	CTG ...	LFV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, NSC, v6-5
104088	87	CTG ...	LSY ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
15248	54	CTG ...	LAE ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, NSC, Skin_tumor, v6-5
15445	84	GTG ...	VEV ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Downstream NMD sORF	MEF, NSC, Skin_tumor, v6-5
808033	138	ATG ...	MHA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1368633	183	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
110283	39	ATG ...	MQM ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, NSC, v6-5
14792	39	ATG ...	MDH ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	E14, Glioma, Liver, MEF, MESC, NSC, Skin_tumor, v6-5
99887	189	GTG ...	VTY ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5

Export data