Transcript 147443

Transcript

ID CARD

MetamORF ID

147443

ENSMUST00000154945

Name

Toe1-208

Strand

Biotype

processed_transcript

Start-end positions

116804012-116805192

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:68276

Aliases

4930584N22Rik,
4933424D16Rik, AI413517, ENSMUSG00000028688,
MGI:1915526, NCBI:68276, OFF:Toe1,
Toe1

Chr 4

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
154217	225	CTG ...	LHR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
160046	270	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
157322	186	GTG ...	VMA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1379137	75	GTG ...	VTK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
156532	240	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
151290	264	GTG ...	VNQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
147442	174	GTG ...	VGL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
154906	168	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
156589	285	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
159887	267	CTG ...	LVN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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