Transcript 146165

Transcript

ID CARD

MetamORF ID

146165

ENSMUST00000136855

Name

Pomgnt1-208

Strand

Biotype

retained_intron

Start-end positions

116137252-116159849

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:68273

Aliases

0610016I07Rik,
4930467B06Rik, ENSMUSG00000028700, MGI:1915523,
NCBI:68273, OFF:Pomgnt1, Pomgnt1

Chr 4

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
147046	39	ATG ...	MGA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
152632	81	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
149322	30	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
160462	96	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
154379	45	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
147994	117	CTG ...	LYR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
155961	51	TTG ...	LGL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
150085	60	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
147646	45	ATG ...	MFP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
152604	96	CTG ...	LDV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
147271	78	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
56029	150	CTG ...	LWD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
147791	51	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
154925	42	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
146164	39	ATG ...	MKW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
154606	45	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
153725	90	ATG ...	MEE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
150567	54	CTG ...	LEP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
146955	87	GTG ...	VKK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
154581	129	TTG ...	LNR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
150774	57	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
157899	48	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
156349	108	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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