Transcript 145907

Transcript

ID CARD

MetamORF ID

145907

ENSMUST00000143362

Name

Ttc39b-204

Strand

Biotype

retained_intron

Start-end positions

83226419-83233170

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:69863

Aliases

1810054D07Rik,
9130422G05Rik, AI450603, AV103077,
AW215585, ENSMUSG00000038172, MGI:1917113,
NCBI:69863, OFF:Ttc39b, Ttc39b

Chr 4

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
146749	69	CTG ...	LES ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, R1E, v6-5
150792	36	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, v6-5
149401	78	CTG ...	LKG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, v6-5
899554	42	AGG ...	RML ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
147956	111	TTG ...	LKY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, v6-5
1083	63	ATG ...	MLG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
148408	87	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, v6-5
145906	78	CTG ...	LFE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E, v6-5
153557	69	TTG ...	LAF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, R1E, v6-5
154277	105	GTG ...	VDD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, v6-5
157732	39	ATG ...	MLP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, v6-5
146862	60	TTG ...	LYK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, R1E, v6-5
155894	93	CTG ...	LVP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, v6-5
158216	90	GTG ...	VPF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, v6-5
152489	42	TTG ...	LQA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
153665	30	CTG ...	LCF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E
155609	90	TTG ...	LVK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, v6-5
550227	33	CTG ...	LTT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, v6-5
151108	54	TTG ...	LER ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, R1E, v6-5
547917	60	TTG ...	LSW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5

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